PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G229900.1
Common NameB456_007G229900, LOC105804106
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 350aa    MW: 39689.7 Da    PI: 4.828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G229900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12180223654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Gorai.007G229900.1 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 223
                         589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-15177235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9180223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14181234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-4181227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MELSQHAFLE ELLAPRRDSW TTFSAGVTEF LPNGSWNFDS FDENPTLATS NLSFVAFSPP  60
PPPDQTPSFE CPFSDQPYPF VDGFTVRDMD SSYTNVNVVH PHTSPFSATQ QDFPSMVDDE  120
DQFGLLTTDH QQHRLEETKS SCKVEIEQTS NIQGFNMGDL LLGRKRAKTK KLEGQPSKNL  180
MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEDTKEGII  240
INQQSLLKNL KEQKPDEVLV RNSPKFDVER RDTDTRIDIC CATKPGLLLS TVNTLEALGL  300
EIQQCVISCF NEFSMQASCS EVEEQRTLIS SEDIKQALFR NAGYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492056.10.0PREDICTED: transcription factor bHLH61-like
SwissprotQ9LSL18e-89BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D2SIK70.0A0A0D2SIK7_G
STRINGVIT_00s1312g00010.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.15e-90beta HLH protein 93
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]