PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G229900.1

Common Name

B456_007G229900, LOC105804106

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 350aa MW: 39689.7 Da PI: 4.828

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G229900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.7e-12	180	223	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Gorai.007G229900.1 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 223 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-15	177	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	180	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-14	181	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-4	181	227	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MELSQHAFLE ELLAPRRDSW TTFSAGVTEF LPNGSWNFDS FDENPTLATS NLSFVAFSPP 60 PPPDQTPSFE CPFSDQPYPF VDGFTVRDMD SSYTNVNVVH PHTSPFSATQ QDFPSMVDDE 120 DQFGLLTTDH QQHRLEETKS SCKVEIEQTS NIQGFNMGDL LLGRKRAKTK KLEGQPSKNL 180 MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEDTKEGII 240 INQQSLLKNL KEQKPDEVLV RNSPKFDVER RDTDTRIDIC CATKPGLLLS TVNTLEALGL 300 EIQQCVISCF NEFSMQASCS EVEEQRTLIS SEDIKQALFR NAGYGGRCL*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MELSQHAFLE ELLAPRRDSW TTFSAGVTEF LPNGSWNFDS FDENPTLATS NLSFVAFSPP  60
PPPDQTPSFE CPFSDQPYPF VDGFTVRDMD SSYTNVNVVH PHTSPFSATQ QDFPSMVDDE  120
DQFGLLTTDH QQHRLEETKS SCKVEIEQTS NIQGFNMGDL LLGRKRAKTK KLEGQPSKNL  180
MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEDTKEGII  240
INQQSLLKNL KEQKPDEVLV RNSPKFDVER RDTDTRIDIC CATKPGLLLS TVNTLEALGL  300
EIQQCVISCF NEFSMQASCS EVEEQRTLIS SEDIKQALFR NAGYGGRCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	189	ERRRRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492056.1	0.0	PREDICTED: transcription factor bHLH61-like
Swissprot	Q9LSL1	8e-89	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0D2SIK7	0.0	A0A0D2SIK7_G
STRING	VIT_00s1312g00010.t01	1e-150	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2043	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	5e-90	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Gorai.007G229900.1
Entrez Gene	105804106

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]